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1

SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases

Foerster, Hartmut, Bombarely, Aureliano, Battey, James N D, Sierro, Nicolas, Ivanov, Nikolai V, Mueller, Lukas A

Journal:

Year:

2018

Language:

english

File:

PDF, 1.06 MB

english, 2018

2

Babytalk as a communication of intimate attachment: An initial study in adult romances and friendships

MEREDITH L. BOMBAR, LAWRENCE W. LITTIG JR.

Journal:

Personal Relationships

Year:

1996

Language:

english

File:

PDF, 1.78 MB

english, 1996

3

The Rise and Rise of Nicotiana benthamiana : A Plant for All Reasons

Bally, Julia, Jung, Hyungtaek, Mortimer, Cara, Naim, Fatima, Philips, Joshua G., Hellens, Roger, Bombarely, Aureliano, Goodin, Michael M., Waterhouse, Peter M.

Journal:

Annual Review of Phytopathology

Year:

2018

Language:

english

File:

PDF, 2.50 MB

english, 2018

4

Generation and analysis of ESTs from strawberry (Fragaria xananassa) fruits and evaluation of their utility in genetic and molecular studies

Aureliano Bombarely, Catharina Merchante, Fabiana Csukasi, Eduardo Cruz-Rus, José L Caballero, Nieves Medina-Escobar, Rosario Blanco-Portales, Miguel A Botella, Juan Muñoz-Blanco, José F Sánchez-Sevil

Journal:

Year:

2010

Language:

english

File:

PDF, 1004 KB

english, 2010

5

Genetic and genome-wide transcriptomic analyses identify co-regulation of oxidative response and hormone transcript abundance with vitamin C content in tomato fruit

Lima-Silva, Viviana, Rosado, Abel, Amorim-Silva, Vitor, Muñoz-Mérida, Antonio, Pons, Clara, Bombarely, Aureliano, Trelles, Oswaldo, Fernández-Muñoz, Rafael, Granell, Antonio, Valpuesta, Victoriano, Bo

Journal:

Year:

2012

Language:

english

File:

PDF, 1.08 MB

english, 2012

6

Experimental and Numerical Investigation of Bed-Load Transport under Unsteady Flows

Bombar, Gökçen, Elçi, Şebnem, Tayfur, Gokmen, Güney, M. Şükrü, Bor, Aslı

Journal:

Journal of Hydraulic Engineering

Year:

2011

Language:

english

File:

PDF, 634 KB

english, 2011

7

Non-cyanobacterial nifH phylotypes in the North Pacific Subtropical Gyre detected by flow-cytometry cell sorting

Bombar, Deniz, Turk-Kubo, Kendra A., Robidart, Julie, Carter, Brandon J., Zehr, Jonathan P.

Journal:

Environmental Microbiology Reports

Year:

2013

Language:

english

File:

PDF, 824 KB

english, 2013

8

Distorted Physical Model to Study Sudden Partial Dam Break Flows in an Urban Area

Güney, M. S., Tayfur, G., Bombar, G., Elci, S.

Journal:

Journal of Hydraulic Engineering

Year:

2014

Language:

english

File:

PDF, 23.47 MB

english, 2014

9

An Endophyte Constructs Fungicide-Containing Extracellular Barriers for Its Host Plant

Soliman, Sameh S.M., Greenwood, John S., Bombarely, Aureliano, Mueller, Lukas A., Tsao, Rong, Mosser, Dick D., Raizada, Manish N.

Journal:

Current Biology

Year:

2015

Language:

english

File:

PDF, 3.23 MB

english, 2015

10

De novo assembly and functional annotation of Myrciaria dubia fruit transcriptome reveals multiple metabolic pathways for L-ascorbic acid biosynthesis

Castro, Juan C., Maddox, J. Dylan, Cobos, Marianela, Requena, David, Zimic, Mirko, Bombarely, Aureliano, Imán, Sixto A., Cerdeira, Luis A., Medina, Andersson E.

Journal:

Year:

2015

Language:

english

File:

PDF, 2.25 MB

english, 2015

11

Environmental impacts and impact mitigation plans for desalination facilities

Bombar, Gökçen, Dölgen, Deniz, Alpaslan, M. Necdet

Journal:

DESALINATION AND WATER TREATMENT

Year:

2016

Language:

english

File:

PDF, 423 KB

english, 2016

12

Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida

Bombarely, Aureliano, Moser, Michel, Amrad, Avichai, Bao, Manzhu, Bapaume, Laure, Barry, Cornelius S., Bliek, Mattijs, Boersma, Maaike R., Borghi, Lorenzo, Bruggmann, Rémy, Bucher, Marcel, D'Agostino,

Journal:

Year:

2016

Language:

english

File:

PDF, 1.80 MB

english, 2016

13

Microplankton biomass and diversity in the Vietnamese upwelling area during SW monsoon under normal conditions and after an ENSO event

Loick-Wilde, Natalie, Bombar, Deniz, Doan, Hai Nhu, Nguyen, Lam Ngoc, Nguyen-Thi, Anh Mai, Voss, Maren, Dippner, Joachim W.

Journal:

Progress in Oceanography

Year:

2017

Language:

english

File:

PDF, 3.92 MB

english, 2017

14

Roses for Darwin

Bombarely, Aureliano

Journal:

Year:

2018

Language:

english

File:

PDF, 861 KB

english, 2018

15

Genome-Wide SNP discovery and genomic characterization in avocado (Persea americana Mill.)

Talavera, Alicia, Soorni, Aboozar, Bombarely, Aureliano, Matas, Antonio J., Hormaza, Jose I.

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 4.06 MB

english, 2019

16

The 'PUCE CAFE' Project: the First 15K Coffee Microarray, a New Tool for Discovering Candidate Genes correlated to Agronomic and Quality Traits

Isabelle Privat, Amélie Bardil, Aureliano Bombarely Gomez, Dany Severac, Christelle Dantec, Ivanna Fuentes, Lukas Mueller, Thierry Joët, David Pot, Séverine Foucrier, Stéphane Dussert, Thierry Leroy,

Journal:

Year:

2011

Language:

english

File:

PDF, 1.01 MB

english, 2011

17

Designing a transcriptome next-generation sequencing project for a nonmodel plant species1

Strickler, S. R., Bombarely, A., Mueller, L. A.

Journal:

American Journal of Botany

Year:

2012

Language:

english

File:

PDF, 520 KB

english, 2012

18

TobEA: an atlas of tobacco gene expression from seed to senescence

Kieron D Edwards, Aureliano Bombarely, Geraint W Story, Fraser Allen, Lukas A Mueller, Steve A Coates, Louise Jones

Journal:

Year:

2010

Language:

english

File:

PDF, 1.87 MB

english, 2010

19

Experimental Study of the Coarse Surface Development Effect on the Bimodal Bed-Load Transport under Unsteady Flow Conditions

Guney, Mehmet Sukru, Bombar, Gokcen, Aksoy, Aysegul Ozgenc

Journal:

Journal of Hydraulic Engineering

Year:

2013

Language:

english

File:

PDF, 2.79 MB

english, 2013

20

Sources of new nitrogen in the Vietnamese upwelling region of the South China Sea

Bombar, Deniz, Dippner, Joachim W., Doan, Hai Nhu, Ngoc, Lam Nguyen, Liskow, Iris, Loick-Wilde, Natalie, Voss, Maren

Journal:

Journal of Geophysical Research

Year:

2010

Language:

english

File:

PDF, 649 KB

english, 2010

21

Riverine influence on nitrogen fixation in the upwelling region off Vietnam, South China Sea

Voss, Maren, Bombar, Deniz, Loick, Natalie, Dippner, Joachim W.

Journal:

Geophysical Research Letters

Year:

2006

Language:

english

File:

PDF, 530 KB

english, 2006

22

The SUD1 Gene Encodes a Putative E3 Ubiquitin Ligase and Is a Positive Regulator of 3-Hydroxy-3-Methylglutaryl Coenzyme A Reductase Activity in Arabidopsis

Doblas, V. G., Amorim-Silva, V., Pose, D., Rosado, A., Esteban, A., Arro, M., Azevedo, H., Bombarely, A., Borsani, O., Valpuesta, V., Ferrer, A., Tavares, R. M., Botella, M. A.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.78 MB

english, 2013

23

A Draft Genome Sequence of Nicotiana benthamiana to Enhance Molecular Plant-Microbe Biology Research

Bombarely, Aureliano, Rosli, Hernan G., Vrebalov, Julia, Moffett, Peter, Mueller, Lukas A., Martin, Gregory B.

Journal:

Molecular Plant-Microbe Interactions

Year:

2012

Language:

english

File:

PDF, 312 KB

english, 2012

24

Genomic analysis of the native EuropeanSolanumspecies,S. dulcamara

Nunzio D’Agostino, Tomek Golas, Henri van de Geest, Aureliano Bombarely…

Journal:

Year:

2013

Language:

english

File:

PDF, 842 KB

english, 2013

25

Deciphering the complex leaf transcriptome of the allotetraploid speciesNicotiana tabacum: a phylogenomic perspective

Aureliano Bombarely, Kieron D Edwards, Juan Sanchez-Tamburrino…

Journal:

Year:

2012

Language:

english

File:

PDF, 376 KB

english, 2012

26

Use of UVP to investigate the evolution of bed configuration

M. Sukru Guney, Gokcen Bombar, Aysegul O. Aksoy…

Journal:

KSCE Journal of Civil Engineering

Year:

2013

Language:

english

File:

PDF, 912 KB

english, 2013

27

Ambroxol/rifampicin interaction

Rosli, Hernan G, Zheng, Yi, Pombo, Marina A, Zhong, Silin, Bombarely, Aureliano, Fei, Zhangjun, Collmer, Alan, Martin, Gregory B

Journal:

Reactions Weekly

Year:

2014

Language:

english

File:

PDF, 219 KB

english, 2014

28

Transcriptomics-based screen for genes induced by flagellin and repressed by pathogen effectors identifies a cell wall-associated kinase involved in plant immunity

Rosli, Hernan G, Zheng, Yi, Pombo, Marina A, Zhong, Silin, Bombarely, Aureliano, Fei, Zhangjun, Collmer, Alan, Martin, Gregory B

Journal:

Year:

2013

Language:

english

File:

PDF, 3.47 MB

english, 2013

29

Donepezil

Rosli, Hernan G, Zheng, Yi, Pombo, Marina A, Zhong, Silin, Bombarely, Aureliano, Fei, Zhangjun, Collmer, Alan, Martin, Gregory B

Journal:

Reactions Weekly

Year:

2014

Language:

english

File:

PDF, 219 KB

english, 2014

30

Ecogenomic sensor reveals controls on N2-fixing microorganisms in the North Pacific Ocean

Robidart, Julie C, Church, Matthew J, Ryan, John P, Ascani, François, Wilson, Samuel T, Bombar, Deniz, Marin, Roman, Richards, Kelvin J, Karl, David M, Scholin, Christopher A, Zehr, Jonathan P

Journal:

The ISME Journal

Year:

2014

Language:

english

File:

PDF, 1.91 MB

english, 2014

31

The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl

Bombarely, A., Menda, N., Tecle, I. Y., Buels, R. M., Strickler, S., Fischer-York, T., Pujar, A., Leto, J., Gosselin, J., Mueller, L. A.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 2.96 MB

english, 2011

32

The wild side of a major crop: Soybean's perennial cousins from Down Under

Sherman-Broyles, S., Bombarely, A., Powell, A. F., Doyle, J. L., Egan, A. N., Coate, J. E., Doyle, J. J.

Journal:

American Journal of Botany

Year:

2014

Language:

english

File:

PDF, 1.18 MB

english, 2014

33

Comparative genomics reveals surprising divergence of two closely related strains of uncultivated UCYN-A cyanobacteria

Bombar, Deniz, Heller, Philip, Sanchez-Baracaldo, Patricia, Carter, Brandon J, Zehr, Jonathan P

Journal:

The ISME Journal

Year:

2014

Language:

english

File:

PDF, 1.84 MB

english, 2014

34

Demethylation of oligogalacturonides by FaPE1 in the fruits of the wild strawberry Fragaria vesca triggers metabolic and transcriptional changes associated with defence and development of the fruit

Osorio, S., Bombarely, A., Giavalisco, P., Usadel, B., Stephens, C., Araguez, I., Medina-Escobar, N., Botella, M. A., Fernie, A. R., Valpuesta, V.

Journal:

Journal of Experimental Botany

Year:

2011

Language:

english

File:

PDF, 769 KB

english, 2011

35

The Sol Genomics Network (SGN)--from genotype to phenotype to breeding

Fernandez-Pozo, N., Menda, N., Edwards, J. D., Saha, S., Tecle, I. Y., Strickler, S. R., Bombarely, A., Fisher-York, T., Pujar, A., Foerster, H., Yan, A., Mueller, L. A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 100 KB

english, 2015

36

The Genome Database for Rosaceae (GDR): year 10 update

Jung, S., Ficklin, S. P., Lee, T., Cheng, C.-H., Blenda, A., Zheng, P., Yu, J., Bombarely, A., Cho, I., Ru, S., Evans, K., Peace, C., Abbott, A. G., Mueller, L. A., Olmstead, M. A., Main, D.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 7.75 MB

english, 2014

37

Analysis of wild-species introgressions in tomato inbreds uncovers ancestral origins

Menda, Naama, Strickler, Susan R, Edwards, Jeremy D, Bombarely, Aureliano, Dunham, Diane M, Martin, Gregory B, Mejia, Luis, Hutton, Samuel F, Havey, Michael J, Maxwell, Douglas P, Mueller, Lukas A

Journal:

BMC Plant Biology

Year:

2014

Language:

english

File:

PDF, 2.74 MB

english, 2014

38

From manual curation to visualization of gene families and networks across Solanaceae plant species

Pujar, A., Menda, N., Bombarely, A., Edwards, J. D., Strickler, S. R., Mueller, L. A.

Journal:

Year:

2013

Language:

english

File:

PDF, 727 KB

english, 2013

39

Measurements of nitrogen fixation in the oligotrophic North Pacific Subtropical Gyre using a free-drifting submersible incubation device

Bombar, Deniz, Taylor, Craig D., Wilson, Samuel T., Robidart, Julie C., Rabines, Ariel, Turk-Kubo, Kendra A., Kemp, John N., Karl, David M., Zehr, Jonathan P.

Journal:

Journal of Plankton Research

Year:

2015

Language:

english

File:

PDF, 870 KB

english, 2015

40

Complete Plastome Sequences from Glycine syndetika and Six Additional Perennial Wild Relatives of Soybean

Sherman-Broyles, S., Bombarely, A., Grimwood, J., Schmutz, J., Doyle, J.

Journal:

G3 Genes|Genome|Genetics

Year:

2014

Language:

english

File:

PDF, 1.66 MB

english, 2014

41

[American Society of Civil Engineers World Environmental And Water Resources Congress 2012 - Albuquerque, New Mexico, United States (May 20-24, 2012)] World Environmental and Water Resources Congress 2012 - Experimental Investigation of Time-Dependent Clear Water Scour around Bridge Pier Due to a Trapezoidal Hydrograph

Guney, M. S., Bombar, G., Aksoy, A. Ozgenc

Year:

2012

Language:

english

File:

PDF, 292 KB

english, 2012

42

Collagen duplicate genes of bone and cartilage participate during regeneration of zebrafish fin skeleton

Duran, I., Csukasi, F., Taylor, S.P., Krakow, D., Becerra, J., Bombarely, A., Marí-Beffa, M.

Journal:

Gene Expression Patterns

Year:

2015

Language:

english

File:

PDF, 2.23 MB

english, 2015

43

Comment on “Current separation and upwelling over the southeast shelf of Vietnam in the South China Sea” by Chen et al.

Dippner, Joachim W., Bombar, Deniz, Loick-Wilde, Natalie, Voss, Maren, Subramaniam, Ajit

Journal:

Journal of Geophysical Research Oceans

Year:

2013

Language:

english

File:

PDF, 1.17 MB

english, 2013

44

Central role of FaGAMYB in the transition of the strawberry receptacle from development to ripening

Vallarino, José G., Osorio, Sonia, Bombarely, Aureliano, Casañal, Ana, Cruz-Rus, Eduardo, Sánchez-Sevilla, José F., Amaya, Iraida, Giavalisco, Patrick, Fernie, Alisdair R., Botella, Miguel A., Valpues

Journal:

New Phytologist

Year:

2015

Language:

english

File:

PDF, 1.77 MB

english, 2015

45

Gene expression atlas of fruit ripening of octoploid strawberry (Fragaria×ananassa) and transcriptome assembly from RNA-seq data

Sevilla, José Federico Sánchez, Vallarino, José G., Osorio, Sonia, Bombarely, Aureliano, Merchante, Katharina, Amaya, Iraida, Botella, Miguel Angel, Valpuesta, Victoriano

Journal:

New Biotechnology

Year:

2016

Language:

english

File:

PDF, 53 KB

english, 2016

46

Expression-level support for gene dosage sensitivity in three Glycine subgenus Glycine polyploids and their diploid progenitors

Coate, Jeremy E., Song, Michael J., Bombarely, Aureliano, Doyle, Jeff J.

Journal:

New Phytologist

Year:

2016

Language:

english

File:

PDF, 675 KB

english, 2016

47

Marine Non-Cyanobacterial Diazotrophs: Moving beyond Molecular Detection

Bombar, Deniz, Paerl, Ryan W., Riemann, Lasse

Journal:

Trends in Microbiology

Year:

2016

Language:

english

File:

PDF, 2.21 MB

english, 2016

48

Study of the time-dependent clear water scour around circular bridge piers

Aksoy, Aysegul Ozgenc, Bombar, Gokcen, Arkis, Tanıl, Guney, Mehmet Sukru

Journal:

Journal of Hydrology and Hydromechanics

Year:

2017

Language:

english

File:

PDF, 501 KB

english, 2017

49

Subjective and Objective Measures of Dryness Symptoms in Primary Sjögren's Syndrome - Capturing the discrepancy

Bezzina, Oriana M, Gallagher, Peter, Mitchell, Sheryl, Bowman, Simon J, Griffiths, Bridget, Hindmarsh, Victoria, Hargreaves, Ben, Price, Elizabeth J, Pease, Colin T, Emery, Paul, Lanyon, Peter, Bombar

Journal:

Arthritis Care & Research

Year:

2016

Language:

english

File:

PDF, 761 KB

english, 2016

50

Organelle_PBA, a pipeline for assembling chloroplast and mitochondrial genomes from PacBio DNA sequencing data

Soorni, Aboozar, Haak, David, Zaitlin, David, Bombarely, Aureliano

Journal:

Year:

2017

Language:

english

File:

PDF, 681 KB

english, 2017